Advances and Opportunities in Single-Cell Transcriptomics for Plant Research

Author:

Seyfferth Carolin12,Renema Jim12,Wendrich Jos R.12,Eekhout Thomas12,Seurinck Ruth34,Vandamme Niels34,Blob Bernhard56,Saeys Yvan34,Helariutta Yrjo56,Birnbaum Kenneth D.7,De Rybel Bert12

Affiliation:

1. Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium;

2. VIB Center for Plant Systems Biology, 9052 Ghent, Belgium

3. Data Mining and Modeling for Biomedicine, VIB Center for Inflammation Research, 9052 Ghent, Belgium

4. Department of Applied Mathematics, Computer Science and Statistics, Ghent University, 9000 Ghent, Belgium

5. The Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, United Kingdom

6. Viikki Plant Science Centre, HiLIFE/Organismal and Evolutionary Biology Research Program, Institute of Biotechnology, Faculty of Biological and Environmental Sciences, University of Helsinki, 00014 Helsinki, Finland

7. Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA;

Abstract

Single-cell approaches are quickly changing our view on biological systems by increasing the spatiotemporal resolution of our analyses to the level of the individual cell. The field of plant biology has fully embraced single-cell transcriptomics and is rapidly expanding the portfolio of available technologies and applications. In this review, we give an overview of the main advances in plant single-cell transcriptomics over the past few years and provide the reader with an accessible guideline covering all steps, from sample preparation to data analysis. We end by offering a glimpse of how these technologies will shape and accelerate plant-specific research in the near future.

Publisher

Annual Reviews

Subject

Cell Biology,Plant Science,Molecular Biology,Physiology

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