EXPERIENCE INTRODUCTION OF QUANTITATIVE ANALYSIS OF CHIMERISM AFTER ALLOGENIC STEM CELL TRANSPLANTATION BY REAL-TIME PCR WITH INDEL POLYMORPHISMS

Author:

Cheranev V. V.1ORCID,Loginova M. A.1ORCID,Kutyavina S. S.1ORCID,Smirnova D. N.1ORCID,Zorina N. A.1ORCID,Minaeva N. V.1ORCID,Paramonov I. V.1ORCID

Affiliation:

1. FSBIS Kirov scientific-research institute of hematology and blood transfusion of FMBA of Russia

Abstract

Using data obtained from domestic and foreign sources, we formed a set of primers and fluorogenic probes for analyzing twenty-six specific sequence polymorphisms and one reference gene. In the course of evaluating the effectiveness of real-time PCR, using the example of one of the markers (S01a), we obtained the optimal amount of DNA per reaction (70 ng), providing a resolution of at least 0.1% of the method with the ability to estimate linear chimerism. Formed panel of primers for genetic polymorphisms - InDel has a high degree of informational content for donor-recipient pairs of Russia. From January 2018 to June 2019, a quantitative assessment of the level of linear (CD3 +, CD34 +) and general chimerism was carried out for 28 patients of the clinic of the Institution. Finally, we analyzed patients who received allografts and present 4 different clinical situations that illustrate the informativity level of this method.

Publisher

EKOlab

Subject

Biochemistry, medical,Medical Laboratory Technology,General Medicine

Reference17 articles.

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3. Koldehoff M., Steckel N.K., Hlinka M., Beelen D.W., Elmaagacli A.H. Quantitative analysis of chimerism after allogeneic stem cell transplantation by real-time polymerase chain reaction with single nucleotide polymorphisms, standard tandem repeats, and Y-chromosome-specific sequences. Am. J. Hematol. 2006; 81(10): 735–46.

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