Key interaction patterns in proteins revealed by cluster expansion of the partition function
Author:
Publisher
Springer Science and Business Media LLC
Subject
Surfaces and Interfaces,General Materials Science,General Chemistry,Biophysics,Biotechnology
Link
https://link.springer.com/content/pdf/10.1140/epje/s10189-022-00250-x.pdf
Reference25 articles.
1. L. Di Paola, M. De Ruvo, P. Paci, D. Santoni, A. Giuliani, Protein contact networks: an emerging paradigm in chemistry. Chem. Rev. 113, 1598–1613 (2013)
2. M. Vendruscolo, N.V. Dokholyan, E. Paci, M. Karplus, Small-world view of the amino acids that play a key role in protein folding. Phys. Rev. E 65, 061910 (2002)
3. N. Kannan, S. Vishveshwara, Identification of side-chain clusters in protein structures by a graph spectral method. J. Mol. Biol. 292, 441–464 (1999)
4. M. Vendruscolo, E. Paci, C.M. Dobson, M. Karplus, Three key residues form a critical contact network in a protein folding transition state. Nature 409, 641–645 (2001)
5. V.I. Abkevich, A.M. Gutin, E.I. Shakhnovich, Specific nucleus as the transition state for protein folding: evidence from the lattice model. Biochemistry 33, 10026–10036 (1994)
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