Discovery of SARS-CoV-2 papain-like protease (PL pro ) inhibitors with efficacy in a murine infection model

Author:

Garnsey Michelle R.1ORCID,Robinson Matthew C.2ORCID,Nguyen Luong T.2,Cardin Rhonda3ORCID,Tillotson Joseph1ORCID,Mashalidis Ellene4,Yu Aijia5ORCID,Aschenbrenner Lisa4ORCID,Balesano Amanda4ORCID,Behzadi Amin3ORCID,Boras Britton6ORCID,Chang Jeanne S.4ORCID,Eng Heather4ORCID,Ephron Andrew4ORCID,Foley Tim4ORCID,Ford Kristen K.4ORCID,Frick James M.2ORCID,Gibson Scott7,Hao Li3ORCID,Hurst Brett7ORCID,Kalgutkar Amit S.1ORCID,Korczynska Magdalena1ORCID,Lengyel-Zhand Zsofia4,Gao Liping5,Meredith Hannah R.1ORCID,Patel Nandini C.1ORCID,Polivkova Jana4ORCID,Rai Devendra4,Rose Colin R.4,Rothan Hussin3,Sakata Sylvie K.6ORCID,Vargo Thomas R.2ORCID,Qi Wenying5ORCID,Wu Huixian4ORCID,Liu Yiping5,Yurgelonis Irina3ORCID,Zhang Jinzhi8ORCID,Zhu Yuao3ORCID,Zhang Lei1ORCID,Lee Alpha A.2ORCID

Affiliation:

1. Pfizer Global Research and Development, Cambridge, MA 02139, USA.

2. PostEra, 1 Broadway, 14th floor, Cambridge, MA 02142, USA.

3. Pfizer Global Research and Development, Pearl River, NY 10965, USA.

4. Pfizer Global Research and Development, Groton, CT 06340, USA.

5. WuXi, WuXi AppTec (Shanghai) Co. Ltd. Shanghai 200131, China.

6. Pfizer Global Research and Development, La Jolla, CA 92121, USA.

7. Institute for Antiviral Research, Department of Animal, Dairy, and Veterinary Sciences,Utah State University, Logan, UT 84322, USA.

8. Pfizer Global Research and Development, Shanghai 201210, China.

Abstract

Vaccines and first-generation antiviral therapeutics have provided important protection against COVID-19 caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). However, there remains a need for additional therapeutic options that provide enhanced efficacy and protection against potential viral resistance. The SARS-CoV-2 papain-like protease (PL pro ) is one of the two essential cysteine proteases involved in viral replication. While inhibitors of the SARS-CoV-2 main protease have demonstrated clinical efficacy, known PL pro inhibitors have, to date, lacked the inhibitory potency and requisite pharmacokinetics to demonstrate that targeting PL pro translates to in vivo efficacy in a preclinical setting. Here, we report the machine learning–driven discovery of potent, selective, and orally available SARS-CoV-2 PL pro inhibitors, with lead compound PF-07957472 ( 4 ) providing robust efficacy in a mouse-adapted model of COVID-19 infection.

Publisher

American Association for the Advancement of Science (AAAS)

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