Sexually dimorphic computational histopathological signatures prognostic of overall survival in high-grade gliomas via deep learning

Author:

Verma Ruchika123ORCID,Alban Tyler J.45ORCID,Parthasarathy Prerana4ORCID,Mokhtari Mojgan1,Toro Castano Paula6ORCID,Cohen Mark L.7,Lathia Justin D.589ORCID,Ahluwalia Manmeet1011,Tiwari Pallavi121314ORCID

Affiliation:

1. Department of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA.

2. Windreich Department of Artificial Intelligence and Human Health, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

3. Hasso Plattner Institute for Digital Health at Mount Sinai, Icahn School of Medicine at Mount Sinai, New York, NY, USA.

4. Center for Immunotherapy and Precision Immuno-Oncology, Cleveland Clinic Foundation, Cleveland, OH, USA.

5. Lerner Research Institute, Cleveland Clinic, Cleveland, OH, USA.

6. Department of Pathology, Cleveland Clinic, Cleveland, OH, USA.

7. Department of Pathology, University Hospitals Case Medical Center, Cleveland, OH, USA.

8. Rose Ella Burkhardt Brain Tumor and Neuro-Oncology Center, Cleveland Clinic, Cleveland, OH, USA.

9. Case Comprehensive Cancer Center, Case Western Reserve University, Cleveland, OH, USA.

10. Miami Cancer Institute, Miami, FL, USA.

11. Herbert Wertheim College of Medicine, Florida International University, University Park, FL, USA.

12. Departments of Radiology and Biomedical Engineering, University of Wisconsin–Madison, Madison, WI, USA.

13. Carbone Cancer Center, Madison, WI, USA.

14. William S. Middleton Memorial Veterans Affairs Healthcare, Madison, WI, USA.

Abstract

High-grade glioma (HGG) is an aggressive brain tumor. Sex is an important factor that differentially affects survival outcomes in HGG. We used an end-to-end deep learning approach on hematoxylin and eosin (H&E) scans to (i) identify sex-specific histopathological attributes of the tumor microenvironment (TME), and (ii) create sex-specific risk profiles to prognosticate overall survival. Surgically resected H&E-stained tissue slides were analyzed in a two-stage approach using ResNet18 deep learning models, first, to segment the viable tumor regions and second, to build sex-specific prognostic models for prediction of overall survival. Our mResNet-Cox model yielded C-index (0.696, 0.736, 0.731, and 0.729) for the female cohort and C-index (0.729, 0.738, 0.724, and 0.696) for the male cohort across training and three independent validation cohorts, respectively. End-to-end deep learning approaches using routine H&E-stained slides, trained separately on male and female patients with HGG, may allow for identifying sex-specific histopathological attributes of the TME associated with survival and, ultimately, build patient-centric prognostic risk assessment models.

Publisher

American Association for the Advancement of Science (AAAS)

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