Comprehensive single-cell transcriptional profiling of a multicellular organism

Author:

Cao Junyue12ORCID,Packer Jonathan S.1ORCID,Ramani Vijay1ORCID,Cusanovich Darren A.1ORCID,Huynh Chau1,Daza Riza1,Qiu Xiaojie12,Lee Choli1ORCID,Furlan Scott N.345,Steemers Frank J.6,Adey Andrew78ORCID,Waterston Robert H.1ORCID,Trapnell Cole1ORCID,Shendure Jay19ORCID

Affiliation:

1. Department of Genome Sciences, University of Washington, Seattle, WA, USA.

2. Molecular and Cellular Biology Program, University of Washington, Seattle, WA, USA.

3. Ben Towne Center for Childhood Cancer Research, Seattle Children’s Research Institute, Seattle, WA, USA.

4. Department of Pediatrics, University of Washington, Seattle, WA, USA.

5. Fred Hutchinson Cancer Research Center, Seattle, WA, USA.

6. Advanced Research Group, Illumina, San Diego, CA, USA.

7. Department of Molecular & Medical Genetics, Oregon Health & Science University, Portland, OR, USA.

8. Knight Cardiovascular Institute, Portland, OR, USA.

9. Howard Hughes Medical Institute, Seattle, WA, USA.

Abstract

Sequencing each cell of the nematode Single-cell sequencing is challenging owing to the limited biological material available in an individual cell and the high cost of sequencing across multiple cells. Cao et al. developed a two-step combinatorial barcoding method to profile both single-cell and single-nucleus transcriptomes without requiring physical isolation of each cell. The authors profiled almost 50,000 single cells from an individual Caenorhabditis elegans larval stage and were able to identify and recover information from different, even rare, cell types. Science , this issue p. 661

Funder

National Institutes of Health

Howard Hughes Medical Institute

National Heart, Lung, and Blood Institute

W. M. Keck Foundation

Dale. F. Frey Award for Breakthrough Scientists

Alfred P. Sloan Foundation Research Fellowship

Paul G. Allen Family Foundation

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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