The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes-Reference-Cited by-同舟云学术

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Published:2012-06-29 Issue:6089 Volume:336 Page:1715-1719
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Floudas Dimitrios¹,Binder Manfred¹,Riley Robert²,Barry Kerrie²,Blanchette Robert A.³,Henrissat Bernard⁴,Martínez Angel T.⁵,Otillar Robert²,Spatafora Joseph W.⁶,Yadav Jagjit S.⁷,Aerts Andrea²,Benoit Isabelle⁸⁹,Boyd Alex⁶,Carlson Alexis¹,Copeland Alex²,Coutinho Pedro M.⁴,de Vries Ronald P.⁸⁹,Ferreira Patricia¹⁰,Findley Keisha¹¹,Foster Brian²,Gaskell Jill¹²,Glotzer Dylan¹,Górecki Paweł¹³,Heitman Joseph¹¹,Hesse Cedar⁶,Hori Chiaki¹⁴,Igarashi Kiyohiko¹⁴,Jurgens Joel A.³,Kallen Nathan¹,Kersten Phil¹²,Kohler Annegret¹⁵,Kües Ursula¹⁶,Kumar T. K. Arun¹⁷,Kuo Alan²,LaButti Kurt²,Larrondo Luis F.¹⁸,Lindquist Erika²,Ling Albee¹,Lombard Vincent⁴,Lucas Susan²,Lundell Taina¹⁹,Martin Rachael¹,McLaughlin David J.¹⁷,Morgenstern Ingo²⁰,Morin Emanuelle¹⁵,Murat Claude¹⁵,Nagy Laszlo G.¹,Nolan Matt²,Ohm Robin A.²,Patyshakuliyeva Aleksandrina⁹,Rokas Antonis²¹,Ruiz-Dueñas Francisco J.⁵,Sabat Grzegorz²²,Salamov Asaf²,Samejima Masahiro¹⁴,Schmutz Jeremy²³,Slot Jason C.²¹,St. John Franz¹²,Stenlid Jan²⁴,Sun Hui²,Sun Sheng¹¹,Syed Khajamohiddin⁷,Tsang Adrian²⁰,Wiebenga Ad⁹,Young Darcy¹,Pisabarro Antonio²⁵,Eastwood Daniel C.²⁶,Martin Francis¹⁵,Cullen Dan¹²,Grigoriev Igor V.²,Hibbett David S.¹

Affiliation:

1. Biology Department, Clark University, Worcester, MA 01610, USA.

2. U.S. Department of Energy Joint Genome Institute, Walnut Creek, CA 94598, USA.

3. Department of Plant Pathology, University of Minnesota, St. Paul, MN 55108, USA.

4. Architecture et Fonction des Macromolécules Biologiques, Aix-Marseille Université, CNRS UMR 6098, 13288 Marseille Cedex 9, France.

5. Centro de Investigaciones Biológicas, CSIC, Ramiro de Maeztu 9, E-28040 Madrid, Spain.

6. Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.

7. Environmental Genetics and Molecular Toxicology Division, Department of Environmental Health, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA.

8. Microbiology and Kluyver Centre for Genomics of Industrial Fermentation, Utrecht University, Padualaan 8, 3584 CH Utrecht, Netherlands.

9. CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, Netherlands.

10. Department of Biochemistry and Molecular and Cellular Biology and Institute of Biocomputation and Physics of Complex Systems, Zaragoza University, 50009, Zaragoza, Spain.

11. Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA.

12. USDA Forest Products Laboratory, Madison, WI 53726, USA.

13. Institute of Informatics, Warsaw University, Warsaw, 02-097, Poland.

14. Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.

15. INRA, UMR 1136, INRA-Nancy Université, Interactions Arbres/Microorganismes, 54280 Champenoux, France.

16. Molecular Wood Biotechnology and Technical Mycology, Büsgen-Institute, Georg-August-University Göttingen, Büsgenweg 2, D-37077 Göttingen, Germany.

17. Department of Plant Biology, University of Minnesota, St. Paul, MN 55108, USA.

18. Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontifica Universidad Católica de Chile, Casilla 114-D, Santiago 833-1010, Chile.

19. Department of Applied Chemistry and Microbiology, Viikki Biocenter, P.O. Box 56, Biocenter 1, University of Helsinki, FIN-00014 Helsinki, Finland.

20. Centre for Structural and Functional Genomics, Concordia University, 7141 Sherbrooke Street West, Montreal, Quebec H4B 1R6, Canada.

21. Department of Biological Sciences, Vanderbilt University, Nashville, TN 37235, USA.

22. University of Wisconsin Biotechnology Center, Madison, WI 53726, USA.

23. HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA.

24. Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Box 7026, Ulls v 26A, 750 07 Uppsala, Sweden.

25. Genetics and Microbiology Research Group, Public University of Navarre, 31006 Pamplona, Spain.

26. College of Science, University of Swansea, Singleton Park, Swansea SA2 8PP, UK.

Abstract

Dating Wood Rot Specific lineages within the basidiomycete fungi, white rot species, have evolved the ability to break up a major structural component of woody plants, lignin, relative to their non–lignin-decaying brown rot relatives. Through the deep phylogenetic sampling of fungal genomes, Floudas et al. (p. 1715 ; see the Perspective by

Hittinger

) mapped the detailed evolution of wood-degrading enzymes. A key peroxidase and other enzymes involved in lignin decay were present in the common ancestor of the Agaricomycetes. These genes then expanded through gene duplications in parallel, giving rise to white rot lineages.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference25 articles.

1. Lignin, land plants, and fungi: Biological evolution affecting Phanerozoic oxygen balance

2. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

3. Genome, transcriptome, and secretome analysis of wood decay fungusPostia placentasupports unique mechanisms of lignocellulose conversion

4. The Plant Cell Wall–Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

5. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

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