Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication-Reference-Cited by-同舟云学术

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

Published:2014-08-29 Issue:6200 Volume:345 Page:1074-1079
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Carneiro Miguel¹,Rubin Carl-Johan²,Di Palma Federica³⁴,Albert Frank W.⁵,Alföldi Jessica³,Barrio Alvaro Martinez²,Pielberg Gerli²,Rafati Nima²,Sayyab Shumaila⁶,Turner-Maier Jason³,Younis Shady²⁷,Afonso Sandra¹,Aken Bronwen⁸⁹,Alves Joel M.¹¹⁰,Barrell Daniel⁸⁹,Bolet Gerard¹¹,Boucher Samuel¹²,Burbano Hernán A.⁵,Campos Rita¹,Chang Jean L.³,Duranthon Veronique¹³,Fontanesi Luca¹⁴,Garreau Hervé¹¹,Heiman David³,Johnson Jeremy³,Mage Rose G.¹⁵,Peng Ze¹⁶,Queney Guillaume¹⁷,Rogel-Gaillard Claire¹⁸,Ruffier Magali⁸⁹,Searle Steve⁸,Villafuerte Rafael¹⁹,Xiong Anqi²⁰,Young Sarah³,Forsberg-Nilsson Karin²⁰,Good Jeffrey M.⁵²¹,Lander Eric S.³,Ferrand Nuno¹²²,Lindblad-Toh Kerstin²³,Andersson Leif²⁶²³

Affiliation:

1. CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Campus Agrário de Vairão, Universidade do Porto, 4485-661, Vairão, Portugal.

2. Science for Life Laboratory Uppsala, Department of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.

3. Broad Institute of Harvard and Massachusetts Institute of Technology, 7 Cambridge Center, Cambridge, MA 02142, USA.

4. Vertebrate and Health Genomics, The Genome Analysis Centre, Norwich, UK.

5. Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

6. Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Uppsala, Sweden.

7. Department of Animal Production, Ain Shams University, Shoubra El-Kheima, Cairo, Egypt.

8. Wellcome Trust Sanger Institute, Hinxton, UK.

9. European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

10. Department of Genetics, University of Cambridge, Cambridge CB2 3EH, UK.

11. Institut National de la Recherche Agronomique (INRA), UMR1388 Génétique, Physiologie et Systèmes d’Elevage, F-31326 Castanet-Tolosan, France.

12. Labovet Conseil, BP539, 85505 Les Herbiers Cedex, France.

13. INRA, UMR1198 Biologie du Développement et Reproduction, F-78350 Jouy-en-Josas, France.

14. Department of Agricultural and Food Sciences, Division of Animal Sciences, University of Bologna, 40127 Bologna, Italy.

15. Laboratory of Immunology, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health, Bethesda, MD 20892, USA.

16. U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA.

17. ANTAGENE, Animal Genomics Laboratory, Lyon, France.

18. INRA, UMR1313 Génétique Animale et Biologie Intégrative, F- 78350, Jouy-en-Josas, France.

19. Instituto de Estudios Sociales Avanzados, (IESA-CSIC) Campo Santo de los Mártires 7, Córdoba, Spain.

20. Science for Life Laboratory, Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden.

21. Division of Biological Sciences, The University of Montana, Missoula, MT 59812, USA.

22. Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s⁄n. 4169-007 Porto, Portugal.

23. Department of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX 77843-4458, USA.

Abstract

Rabbits softly swept to domestication When people domesticate animals, they select for tameness and tolerance of humans. What else do they look for? To identify the selective pressures that led to rabbit domestication, Carneiro et al. sequenced a domestic rabbit genome and compared it to that of its wild brethren (see the Perspective by Lohmueller). Domestication did not involve a single gene changing, but rather many gene alleles changing in frequency between tame and domestic rabbits, known as a soft selective sweep. Many of these alleles have changes that may affect brain development, supporting the idea that tameness involves changes at multiple loci. Science , this issue p. 1074 ; see also p. 1000

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference60 articles.

1. C. Darwin On the Origins of Species by Means of Natural Selection or the Preservation of Favoured Races in the Struggle for Life (John Murray London 1859).

2. J. A. Clutton-Brock Natural History of Domesticated Mammals (Cambridge Univ. Press Cambridge 1999).

3. The Genetic Structure of Domestic Rabbits

4. Evidence for Widespread Positive and Purifying Selection Across the European Rabbit (Oryctolagus cuniculus) Genome

5. The hitch-hiking effect of a favourable gene

Cited by 313 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Evolutionary and functional characterization of lagomorph guanylate-binding proteins: a story of gain and loss and shedding light on expression, localization and innate immunity-related functions;Frontiers in Immunology;2024-01-29

2. Multiple genomic solutions for local adaptation in two closely related species (sheep and goats) facing the same climatic constraints;Molecular Ecology;2023-12-27

3. What is a companion animal? An ethological approach based on Tinbergen's four questions. Critical review;Applied Animal Behaviour Science;2023-10

4. Genome wide association study of growth and feed efficiency traits in rabbits;World Rabbit Science;2023-09-28

5. Multi-omics analysis reveals signatures of selection and loci associated with complex traits in pigs;2023-09-21