A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )-Reference-Cited by-同舟云学术

A Draft Sequence of the Rice Genome ( Oryza sativa L. ssp. indica )

Published:2002-04-05 Issue:5565 Volume:296 Page:79-92
ISSN:0036-8075
Container-title:Science
language:en
Short-container-title:Science

Author:

Yu Jun¹²³⁴,Hu Songnian¹,Wang Jun¹²⁵,Wong Gane Ka-Shu¹²⁴,Li Songgang¹⁵,Liu Bin¹,Deng Yajun¹⁶,Dai Li¹,Zhou Yan²⁷,Zhang Xiuqing¹³,Cao Mengliang⁸,Liu Jing²,Sun Jiandong¹,Tang Jiabin¹³,Chen Yanjiong¹⁶,Huang Xiaobing¹,Lin Wei²,Ye Chen¹,Tong Wei¹,Cong Lijuan¹,Geng Jianing¹,Han Yujun¹,Li Lin¹,Li Wei¹⁹,Hu Guangqiang¹,Huang Xiangang¹,Li Wenjie¹,Li Jian¹,Liu Zhanwei¹,Li Long¹,Liu Jianping¹,Qi Qiuhui¹,Liu Jinsong¹,Li Li¹,Li Tao¹,Wang Xuegang¹,Lu Hong¹,Wu Tingting¹,Zhu Miao¹,Ni Peixiang¹,Han Hua¹,Dong Wei¹³,Ren Xiaoyu¹,Feng Xiaoli¹³,Cui Peng¹,Li Xianran¹,Wang Hao¹,Xu Xin¹,Zhai Wenxue³,Xu Zhao¹,Zhang Jinsong³,He Sijie³,Zhang Jianguo¹,Xu Jichen³,Zhang Kunlin¹⁵,Zheng Xianwu³,Dong Jianhai²,Zeng Wanyong³,Tao Lin²,Ye Jia²,Tan Jun²,Ren Xide¹,Chen Xuewei³,He Jun²,Liu Daofeng³,Tian Wei²⁶,Tian Chaoguang¹,Xia Hongai¹,Bao Qiyu¹,Li Gang¹,Gao Hui¹,Cao Ting¹,Wang Juan¹,Zhao Wenming¹,Li Ping³,Chen Wei¹,Wang Xudong³,Zhang Yong¹⁵,Hu Jianfei¹⁵,Wang Jing¹⁵,Liu Song¹,Yang Jian¹,Zhang Guangyu¹,Xiong Yuqing¹,Li Zhijie¹,Mao Long³,Zhou Chengshu⁸,Zhu Zhen³,Chen Runsheng¹⁹,Hao Bailin²¹⁰,Zheng Weimou¹¹⁰,Chen Shouyi³,Guo Wei¹¹,Li Guojie¹²,Liu Siqi¹²,Tao Ming¹²,Wang Jian¹²,Zhu Lihuang³,Yuan Longping⁸,Yang Huanming¹²³

Affiliation:

1. Beijing Genomics Institute/Center of Genomics and Bioinformatics, Chinese Academy of Sciences, Beijing 101300, China.

2. Hangzhou Genomics Institute–Institute of Bioinformatics of Zhejiang University–Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China.

3. Institute of Genetics, Chinese Academy of Sciences, Beijing 100101, China.

4. University of Washington Genome Center, Department of Medicine, Seattle, WA 98195, USA.

5. College of Life Sciences, Peking University, Beijing 100871, China.

6. Medical College, Xi'an Jiaotong University, Xi'an 710061, China.

7. Fudan University, Shanghai 200433, China.

8. National Hybrid Rice R&D Center, Changsha 410125, China.

9. Laboratory of Bioinformatics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.

10. Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 100080, China.

11. Digital China Ltd., Beijing 100080, China.

12. Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China.

Abstract

We have produced a draft sequence of the rice genome for the most widely cultivated subspecies in China, Oryza sativa L. ssp. indica , by whole-genome shotgun sequencing. The genome was 466 megabases in size, with an estimated 46,022 to 55,615 genes. Functional coverage in the assembled sequences was 92.0%. About 42.2% of the genome was in exact 20-nucleotide oligomer repeats, and most of the transposons were in the intergenic regions between genes. Although 80.6% of predicted Arabidopsis thaliana genes had a homolog in rice, only 49.4% of predicted rice genes had a homolog in A. thaliana . The large proportion of rice genes with no recognizable homologs is due to a gradient in the GC content of rice coding sequences.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference126 articles.

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2. Sequencing the Rice Genome

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5. The First Plant Genome

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