Intra- and Interspecific Variation in Primate Gene Expression Patterns

Author:

Enard Wolfgang1,Khaitovich Philipp1,Klose Joachim2,Zöllner Sebastian1,Heissig Florian1,Giavalisco Patrick3,Nieselt-Struwe Kay4,Muchmore Elaine56,Varki Ajit5,Ravid Rivka7,Doxiadis Gaby M.8,Bontrop Ronald E.8,Pääbo Svante1

Affiliation:

1. Max-Planck-Institute for Evolutionary Anthropology, Inselstrasse 22, D-04103 Leipzig, Germany.

2. Institut fuer Humangenetik Charité, D-13353 Berlin, Germany.

3. Max-Planck-Institute for Molecular Genetics, D-14195 Berlin, Germany.

4. Max-Planck-Institute of Biophysical Chemistry, D-37077 Göttingen, Germany.

5. University of California San Diego, La Jolla, CA 92093, USA.

6. VA Medical Center, San Diego, La Jolla, CA 92093, USA.

7. The Netherlands Brain Bank, Amsterdam, the Netherlands.

8. Biomedical Primate Research Centre, Rijswijk, the Netherlands.

Abstract

Although humans and their closest evolutionary relatives, the chimpanzees, are 98.7% identical in their genomic DNA sequences, they differ in many morphological, behavioral, and cognitive aspects. The underlying genetic basis of many of these differences may be altered gene expression. We have compared the transcriptome in blood leukocytes, liver, and brain of humans, chimpanzees, orangutans, and macaques using microarrays, as well as protein expression patterns of humans and chimpanzees using two-dimensional gel electrophoresis. We also studied three mouse species that are approximately as related to each other as are humans, chimpanzees, and orangutans. We identified species-specific gene expression patterns indicating that changes in protein and gene expression have been particularly pronounced in the human brain.

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

Reference25 articles.

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5. All apes used in this study died of natural causes. In all cases postmortem times were shorter than 6 hours and only minimal RNA degradation was seen by agarose electrophoresis. Preparation of the samples for the Affymetrix arrays hybridization and scanning were performed as described (18). Nine of 10 genes that differed at least twofold between human and chimpanzee brains could be verified by a Northern analysis. Details of experimental procedures are available on Science Online at www.sciencemag.org/cgi/content/full/296/5566/340/DC1 and on .

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