Defining variant-resistant epitopes targeted by SARS-CoV-2 antibodies: A global consortium study

Author:

Hastie Kathryn M.1ORCID,Li Haoyang1ORCID,Bedinger Daniel2ORCID,Schendel Sharon L.1ORCID,Dennison S. Moses3ORCID,Li Kan3,Rayaprolu Vamseedhar1ORCID,Yu Xiaoying1ORCID,Mann Colin1ORCID,Zandonatti Michelle1ORCID,Diaz Avalos Ruben1,Zyla Dawid1ORCID,Buck Tierra1ORCID,Hui Sean1,Shaffer Kelly1,Hariharan Chitra1ORCID,Yin Jieyun1ORCID,Olmedillas Eduardo1,Enriquez Adrian1ORCID,Parekh Diptiben1ORCID,Abraha Milite3ORCID,Feeney Elizabeth3ORCID,Horn Gillian Q.3ORCID,Aldon Yoann4ORCID,Ali Hanif5ORCID,Aracic Sanja6ORCID,Cobb Ronald R.7,Federman Ross S.8,Fernandez Joseph M.9ORCID,Glanville Jacob10,Green Robin8ORCID,Grigoryan Gevorg8ORCID,Lujan Hernandez Ana G.11ORCID,Ho David D.12ORCID,Huang Kuan-Ying A.13ORCID,Ingraham John8ORCID,Jiang Weidong14ORCID,Kellam Paul1516ORCID,Kim Cheolmin17ORCID,Kim Minsoo17,Kim Hyeong Mi17,Kong Chao18,Krebs Shelly J.19ORCID,Lan Fei920,Lang Guojun18,Lee Sooyoung17ORCID,Leung Cheuk Lun8,Liu Junli14ORCID,Lu Yanan921,MacCamy Anna22ORCID,McGuire Andrew T.22ORCID,Palser Anne L.15ORCID,Rabbitts Terence H.523ORCID,Rikhtegaran Tehrani Zahra24ORCID,Sajadi Mohammad M.24ORCID,Sanders Rogier W.4ORCID,Sato Aaron K.11,Schweizer Liang25ORCID,Seo Jimin17ORCID,Shen Bingqing25ORCID,Snitselaar Jonne L.4,Stamatatos Leonidas22ORCID,Tan Yongcong18,Tomic Milan T.26ORCID,van Gils Marit J.4ORCID,Youssef Sawsan10,Yu Jian12ORCID,Yuan Tom Z.11ORCID,Zhang Qian25ORCID,Peters Bjoern127ORCID,Tomaras Georgia D.3ORCID,Germann Timothy2ORCID,Saphire Erica Ollmann127,

Affiliation:

1. Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, 9420 Athena Circle, La Jolla, CA 92037, USA.

2. Carterra, 825 N. 300 W. Ste C309, Salt Lake City, UT 84103, USA.

3. Center for Human Systems Immunology, Departments of Surgery, Immunology, and Molecular Genetics and Microbiology and Duke Human Vaccine Institute, Duke University, Durham, NC 27701, USA.

4. Department of Medical Microbiology and Infection Prevention, Amsterdam University Medical Centers, Location AMC, University of Amsterdam, Amsterdam Infection & Immunity Institute, 1105 AZ Amsterdam, Netherlands.

5. Quadrucept Bio, Ltd., Cambridge CB23 6DW, UK.

6. Myrio Therapeutics Pty, Ltd., 1 Dalmore Drive, Scoresby, VIC 3179, Australia.

7. National Resilience, Inc., 13200 NW Nano Ct., Alachua, FL 32615, USA.

8. Generate Biomedicines, Inc., 26 Landsdowne Street, Cambridge, MA 02139, USA.

9. Activemotif, Inc., 1914 Palomar Oaks Way, Suite 150, Carlsbad, CA 92008, USA.

10. Centivax, Inc., 201 Gateway Blvd., Floor 1, South San Francisco, CA 94080, USA.

11. Twist Bioscience, 681 Gateway Blvd., South San Francisco, CA 94080, USA.

12. Aaron Diamond AIDS Research Center, Columbia University Vagelos College of Physicians and Surgeons, 701 West 168th St., HHSC 1102, New York, NY 10032, USA.

13. Division of Pediatric Infectious Diseases, Department of Pediatrics, Chang Gung Memorial Hospital and Research Center for Emerging Viral Infections, Chang Gung University, Taoyuan, Taiwan.

14. Shanghai Henlius Biotech, Inc., 9/F, Innov Tower, Zone A, no. 1801 Hongmei Road, Xuhui District, Shanghai, China.

15. Kymab, Ltd., The Bennet Building, Babraham Research Campus, Cambridge CB22 3AT, UK.

16. Department of Infectious Disease, Imperial College, London SW7 2AZ, UK.

17. Celltrion, Inc., Department of Research and Development, 23 Academy-ro Yeonsu-gu Incheon, Republic of Korea.

18. Sanyou Biopharmaceuticals Co., Ltd., no. 188 Xinjunhuan Road, Building 6B-C, 3rd Floor, Minhang District, Shanghai 201114, China.

19. Emerging Infectious Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, MD 20910, USA.

20. Shanghai Key Laboratory of Medical Epigenetics, International Laboratory of Medical Epigenetics and Metabolism, Ministry of Science and Technology, Institutes of Biomedical Sciences, Fudan University, Shanghai, China.

21. AbCipher Biotechnology, 188 Xinjun Ring Road, Building 2, 4th Floor, Minhang District, Shanghai 201114, China.

22. Fred Hutchinson Cancer Research Center, Vaccines and Infectious Diseases Division, Seattle, WA, USA.

23. Institute of Cancer Research, Centre for Cancer Drug Discovery, London SM2 5NG, UK.

24. Division of Clinical Care and Research, Institute of Human Virology, University of Maryland, Baltimore, MD 21201, USA.

25. HiFiBiO, Inc., 237 Putnam Avenue, Cambridge, MA 02139, USA.

26. National Resilience, Inc., 2061 Challenger Dr., Alameda, CA 94501, USA.

27. Department of Medicine, University of California, San Diego, La Jolla, CA 92037, USA.

Abstract

Community of antibodies against COVID-19 The severe acute respiratory syndrome coronavirus 2 spike protein is the basis of many vaccines and is a primary target of neutralizing antibodies after COVID-19 infection. The Coronavirus Immunotherapeutic Consortium (CoVIC), comprising 56 partners across the world, has analyzed a panel of 269 monoclonal antibodies (mAbs) and, on the basis of competition profiles, sorted 186 mAbs that target the receptor binding domain into seven communities. Hastie et al . went on to structurally analyze representative antibody binding and used pseudovirus neutralization assays to study the effect of spike mutations on antibody function, including the combinations of mutations found in certain variants of concern. These results are important to guide both treatment and prevention efforts. —VV

Publisher

American Association for the Advancement of Science (AAAS)

Subject

Multidisciplinary

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