An intrinsically disordered proteins community for ELIXIR

Author:

Davey Norman E.,Babu M. Madan,Blackledge Martin,Bridge Alan,Capella-Gutierrez SalvadorORCID,Dosztanyi Zsuzsanna,Drysdale Rachel,Edwards Richard J.,Elofsson ArneORCID,Felli Isabella C.,Gibson Toby J.,Gutmanas AleksandrasORCID,Hancock John M.ORCID,Harrow Jen,Higgins Desmond,Jeffries Cy M.,Le Mercier PhilippeORCID,Mészáros Balint,Necci Marco,Notredame Cedric,Orchard SandraORCID,Ouzounis Christos A.ORCID,Pancsa Rita,Papaleo Elena,Pierattelli RobertaORCID,Piovesan DamianoORCID,Promponas Vasilis J.ORCID,Ruch Patrick,Rustici Gabriella,Romero PedroORCID,Sarntivijai Sirarat,Saunders Gary,Schuler Benjamin,Sharan Malvika,Shields Denis C.,Sussman Joel L.,Tedds Jonathan A.,Tompa Peter,Turewicz MichaelORCID,Vondrasek Jiri,Vranken Wim F.,Wallace Bonnie Ann,Wichapong Kanin,Tosatto Silvio C. E.ORCID

Abstract

Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are now recognised as major determinants in cellular regulation. This white paper presents a roadmap for future e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of high-quality tools and resources to support the identification, analysis and functional characterisation of IDPs. The roadmap is the result of a workshop titled “An intrinsically disordered protein user community proposal for ELIXIR” held at the University of Padua. The workshop, and further consultation with the members of the wider IDP community, identified the key priority areas for the roadmap including the development of standards for data annotation, storage and dissemination; integration of IDP data into the ELIXIR Core Data Resources; and the creation of benchmarking criteria for IDP-related software. Here, we discuss these areas of priority, how they can be implemented in cooperation with the ELIXIR platforms, and their connections to existing ELIXIR Communities and international consortia. The article provides a preliminary blueprint for an IDP Community in ELIXIR and is an appeal to identify and involve new stakeholders.

Funder

National Institutes of Health

Vetenskapsrådet

ELIXIR

Danmarks Grundforskningsfond

Marie Skłodowska-Curie

European Molecular Biology Laboratory

Israel I-CORE Project

COST Action BM1405 NGP-net

Instruct-ERIC

Carlsberg Foundation Distinguished Fellowship

Swiss Federal Government

Wellcome Trust

BBSRC

Publisher

F1000 Research Ltd

Subject

General Pharmacology, Toxicology and Pharmaceutics,General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,General Medicine

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