This paper proposes a method for evaluating the ecological value of coral reef resources and garden engineering construction assets. By analyzing the state transition of coral reef ecosystems after multiple disturbances, it is shown that ecological resilience is crucial to maintaining the stability and sustainability of the system. Among the many factors that determine coral reef ecosystems, the loss of biodiversity will make the system more vulnerable to external disturbances and continue to degrade. On the basis of relevant research work at home and abroad, combined with China's coral reef ecosystem monitoring capabilities, a set of evaluation index systems for China's coral reef ecosystems are proposed to provide a reference for in-depth understanding of the resilience of China's coral reef ecosystems, and establish a system to protect and improve coral reefs. Ecosystem-oriented management will provide more options for addressing the degradation of coral reef resources.