Elucidating the role of water in collagen self-assembly by isotopically modulating collagen hydration

Author:

Giubertoni Giulia1ORCID,Feng Liru1,Klein Kevin23ORCID,Giannetti Guido1ORCID,Rutten Luco4,Choi Yeji5,van der Net Anouk6,Castro-Linares Gerard6,Caporaletti Federico17,Micha Dimitra8,Hunger Johannes5ORCID,Deblais Antoine7ORCID,Bonn Daniel7ORCID,Sommerdijk Nico4ORCID,Šarić Andela2ORCID,Ilie Ioana M.19ORCID,Koenderink Gijsje H.6ORCID,Woutersen Sander1

Affiliation:

1. Van ’t Hoff Institute for Molecular Sciences, Department of Molecular Photonics, University of Amsterdam, Amsterdam 1090 GD, The Netherlands

2. Institute of Science and Technology Austria, Division of Mathematical and Physical Sciences, Klosterneuburg 3400, Austria

3. University College London, Division of Physics and Astronomy, London WC1E 6BT, United Kingdom

4. Electron Microscopy Center, Radboud Technology Center Microscopy, Department of Medical BioSciences, Radboud University Medical Center, Nijmegen 6525 GA, The Netherlands

5. Max Planck Institute for Polymer Research, Molecular Spectroscopy Department, Mainz 55128, Germany

6. Department of Bionanoscience, Kavli Institute of Nanoscience Delft, Delft University of Technology, Delft 2628 HZ, The Netherlands

7. Van der Waals-Zeeman Institute, Institute of Physics, University of Amsterdam, Amsterdam 1090 GL, The Netherlands

8. Amsterdam University Medical Centers, Human Genetics Department, Vrije Universiteit, Amsterdam 1007 MB, The Netherlands

9. Amsterdam Center for Multiscale Modeling, University of Amsterdam, Amsterdam 1090 GD, The Netherlands

Abstract

Water is known to play an important role in collagen self-assembly, but it is still largely unclear how water–collagen interactions influence the assembly process and determine the fibril network properties. Here, we use the H 2 O/D 2 O isotope effect on the hydrogen-bond strength in water to investigate the role of hydration in collagen self-assembly. We dissolve collagen in H 2 O and D 2 O and compare the growth kinetics and the structure of the collagen assemblies formed in these water isotopomers. Surprisingly, collagen assembly occurs ten times faster in D 2 O than in H 2 O, and collagen in D 2 O self-assembles into much thinner fibrils, that form a more inhomogeneous and softer network, with a fourfold reduction in elastic modulus when compared to H 2 O. Combining spectroscopic measurements with atomistic simulations, we show that collagen in D 2 O is less hydrated than in H 2 O. This partial dehydration lowers the enthalpic penalty for water removal and reorganization at the collagen–water interface, increasing the self-assembly rate and the number of nucleation centers, leading to thinner fibrils and a softer network. Coarse-grained simulations show that the acceleration in the initial nucleation rate can be reproduced by the enhancement of electrostatic interactions. These results show that water acts as a mediator between collagen monomers, by modulating their interactions so as to optimize the assembly process and, thus, the final network properties. We believe that isotopically modulating the hydration of proteins can be a valuable method to investigate the role of water in protein structural dynamics and protein self-assembly.

Funder

Nederlandse Organisatie voor Wetenschappelijk Onderzoek

Ministerie van Onderwijs, Cultuur en Wetenschap

Publisher

Proceedings of the National Academy of Sciences

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