Receptor-mediated chitin perception in legume roots is functionally separable from Nod factor perception

Abstract

The ability of root cells to distinguish mutualistic microbes from pathogens is crucial for plants that allow symbiotic microorganisms to infect and colonize their internal root tissues. Here we show thatLotus japonicusandMedicago truncatulapossess very similar LysM pattern-recognition receptors,LjLYS6/MtLYK9 andMtLYR4, enabling root cells to separate the perception of chitin oligomeric microbe-associated molecular patterns from the perception of lipochitin oligosaccharide by theLjNFR1/MtLYK3 andLjNFR5/MtNFP receptors triggering symbiosis. Inactivation of chitin-receptor genes inLjlys6,Mtlyk9, andMtlyr4mutants eliminates early reactive oxygen species responses and induction of defense-response genes in roots.Ljlys6,Mtlyk9, andMtlyr4mutants were also more susceptible to fungal and bacterial pathogens, while infection and colonization by rhizobia and arbuscular mycorrhizal fungi was maintained. Biochemical binding studies with purifiedLjLYS6 ectodomains further showed that at least six GlcNAc moieties (CO6) are required for optimal binding efficiency. The 2.3-Å crystal structure of theLjLYS6 ectodomain reveals three LysMβααβmotifs similar to other LysM proteins and a conserved chitin-binding site. These results show that distinct receptor sets in legume roots respond to chitin and lipochitin oligosaccharides found in the heterogeneous mixture of chitinaceous compounds originating from soil microbes. This establishes a foundation for genetic and biochemical dissection of the perception and the downstream responses separating defense from symbiosis in the roots of the 80–90% of land plants able to develop rhizobial and/or mycorrhizal endosymbiosis.