CyVerse: Cyberinfrastructure for open science
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Published:2024-02-07
Issue:2
Volume:20
Page:e1011270
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ISSN:1553-7358
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Container-title:PLOS Computational Biology
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language:en
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Short-container-title:PLoS Comput Biol
Author:
Swetnam Tyson L.ORCID, Antin Parker B., Bartelme Ryan, Bucksch AlexanderORCID, Camhy David, Chism GregORCID, Choi Illyoung, Cooksey Amanda M., Cosi Michele, Cowen Cindy, Culshaw-Maurer Michael, Davey Robert, Davey Sean, Devisetty Upendra, Edgin Tony, Edmonds Andy, Fedorov Dmitry, Frady Jeremy, Fonner John, Gillan Jeffrey K., Hossain IqbalORCID, Joyce Blake, Lang Konrad, Lee TinaORCID, Littin Shelley, McEwen Ian, Merchant Nirav, Micklos David, Nelson AndrewORCID, Ramsey Ashley, Roberts Sarah, Sarando Paul, Skidmore Edwin, Song Jawon, Sprinkle Mary Margaret, Srinivasan Sriram, Stanzione Dan, Strootman Jonathan D., Stryeck Sarah, Tuteja Reetu, Vaughn MatthewORCID, Wali Mojib, Wall Mariah, Walls Ramona, Wang Liya, Wickizer Todd, Williams Jason, Wregglesworth John, Lyons Eric
Abstract
CyVerse, the largest publicly-funded open-source research cyberinfrastructure for life sciences, has played a crucial role in advancing data-driven research since the 2010s. As the technology landscape evolved with the emergence of cloud computing platforms, machine learning and artificial intelligence (AI) applications, CyVerse has enabled access by providing interfaces, Software as a Service (SaaS), and cloud-native Infrastructure as Code (IaC) to leverage new technologies. CyVerse services enable researchers to integrate institutional and private computational resources, custom software, perform analyses, and publish data in accordance with open science principles. Over the past 13 years, CyVerse has registered more than 124,000 verified accounts from 160 countries and was used for over 1,600 peer-reviewed publications. Since 2011, 45,000 students and researchers have been trained to use CyVerse. The platform has been replicated and deployed in three countries outside the US, with additional private deployments on commercial clouds for US government agencies and multinational corporations. In this manuscript, we present a strategic blueprint for creating and managing SaaS cyberinfrastructure and IaC as free and open-source software.
Funder
Directorate for Biological Sciences National Science Foundation Servicestelle für Mobilitätsprogramme des österreichischen Bundesministeriums für Bildung, Wissenschaft und Forschung, KulturKontakt Austria Digitale TU Graz
Publisher
Public Library of Science (PLoS)
Cited by
2 articles.
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