HAT: Hypergraph analysis toolbox

Author:

Pickard JoshuaORCID,Chen CanORCID,Salman Rahmy,Stansbury Cooper,Kim Sion,Surana Amit,Bloch Anthony,Rajapakse IndikaORCID

Abstract

Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions. Here we present the Hypergraph Analysis Toolbox (HAT), a software package for visualization and analysis of multi-way interactions in complex systems.

Funder

Air Force Office of Science and Research

NSF

MathWorks

Publisher

Public Library of Science (PLoS)

Subject

Computational Theory and Mathematics,Cellular and Molecular Neuroscience,Genetics,Molecular Biology,Ecology,Modeling and Simulation,Ecology, Evolution, Behavior and Systematics

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1. Stability of ecological systems: A theoretical review;Physics Reports;2024-10

2. Kronecker Product of Tensors and Hypergraphs: Structure and Dynamics;SIAM Journal on Matrix Analysis and Applications;2024-09-03

3. Hypergraph of Functional Connectivity Based on Event-Related Coherence: Magnetoencephalography Data Analysis;Applied Sciences;2024-03-11

4. A Survey on Hyperlink Prediction;IEEE Transactions on Neural Networks and Learning Systems;2023

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