Docking small ligands to molecule of the plant FtsZ protein: Application of the CUDA technology for faster computations

Author:

Demchuk O. M.,Karpov P. A.,Blume Ya. B.

Publisher

Allerton Press

Subject

Genetics,Agricultural and Biological Sciences (miscellaneous),Cell Biology

Reference54 articles.

1. Ritchie, D.W. and Venkatraman, V., Ultra-Fast FFT Protein Docking on Graphics Processors, Bioinformatics, 2010, vol. 26, no. 19, pp. 2398–2405.

2. Chunlian, L., Xicheng, W., Wen, L., Jincheng, Z., and Ensheng, Y., A Parallel Computing of Drug Molecular Docking Design, in Proc. Int. Conf. on Parallel Algorithms and Computing Environments (ICPACE). Hong Kong, 2003, pp. 229–231.

3. Olsak, M., Filpovic, J., and Prokop, M., FastGrid the Accelerated Autogrid Potential Maps Generation for Molecular Docking, in MEMICS 2009: Fifth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, Brno, 2009, pp. 160–167.

4. Hwu, W.W., GPU Computing Gems Emerald Edition (Applications of GPU Computing Series), Waltham: Morgan Kaufmann, 2011.

5. Owens, J.D., Houston, M., Luebke, D., Green, S., Stone, J.E., and Phillips, J.C., GPU Computing, Proc. IEEE, 2008, vol. 96, no. 5, pp. 879–899.

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