1. These authors contributed equally to this manuscript
2. Respiratory Infections Unit (FG36), Department of Infectious Disease Epidemiology, Robert Koch Institute, Berlin, Germany
3. Bioinformatics Unit (MF1), Department of Methodology and Research Infrastructure, Robert Koch Institute, Berlin, Germany
4. German Center for Infection Research (DZIF), partner site Hamburg - Lübeck - Borstel - Riems, Germany
5. Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany
6. National and WHO Supranational Reference Laboratory for Mycobacteria, Research Center Borstel, Borstel, Germany
7. Hasso Plattner Institute, Faculty for Digital Engineering, University of Potsdam, Potsdam, Germany
8. German Center for Infection Research (DZIF), partner site Hannover - Brunswick, Germany