Exploring protein symmetry at the RCSB Protein Data Bank-Reference-Cited by-同舟云学术

Exploring protein symmetry at the RCSB Protein Data Bank

Published:2022-07-08 Issue:3 Volume:6 Page:231-243
ISSN:2397-8554
Container-title:Emerging Topics in Life Sciences
language:en
Short-container-title:

Author:

Duarte Jose M.¹^ORCID,Dutta Shuchismita²³⁴^ORCID,Goodsell David S.²³⁴⁵^ORCID,Burley Stephen K.¹²³⁴⁶^ORCID

Affiliation:

1. 1Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California, San Diego, La Jolla, CA 92093, U.S.A.

2. 2Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, U.S.A.

3. 3Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, U.S.A.

4. 4Rutgers Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, NJ 08903, U.S.A.

5. 5The Scripps Research Institute, La Jolla, CA 92037, U.S.A.

6. 6Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, U.S.A.

Abstract

The symmetry of biological molecules has fascinated structural biologists ever since the structure of hemoglobin was determined. The Protein Data Bank (PDB) archive is the central global archive of three-dimensional (3D), atomic-level structures of biomolecules, providing open access to the results of structural biology research with no limitations on usage. Roughly 40% of the structures in the archive exhibit some type of symmetry, including formal global symmetry, local symmetry, or pseudosymmetry. The Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank (founding member of the Worldwide Protein Data Bank partnership that jointly manages, curates, and disseminates the archive) provides a variety of tools to assist users interested in exploring the symmetry of biological macromolecules. These tools include multiple modalities for searching and browsing the archive, turnkey methods for biomolecular visualization, documentation, and outreach materials for exploring functional biomolecular symmetry.

Publisher

Portland Press Ltd.

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology

Link

https://portlandpress.com/emergtoplifesci/article-pdf/6/3/231/936997/etls-2021-0267c.pdf

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