Teaching Image Processing and Optical Engineering to University Biology Students

Author:

Zimmerman Thomas123ORCID,Esquerra Raymond12,Chan Yee-Hung Mark12,Kulkarni Anagha1,Adelstein Nicole1,Albright Ashley124,Luo Jiayu1,Dean Ziah1ORCID,Ahmed Salma1,Phillips Michelle5,Bianco Simone23ORCID,Capponi Sara23

Affiliation:

1. 1 San Francisco State University, San Francisco, CA, USA

2. 2 Center for Cellular Construction, San Francisco, CA, USA

3. 3 IBM Research–Almaden, Almaden, CA, USA

4. 4 University of California San Francisco, San Francisco, CA, USA

5. 5 Phillips & Associates, San Francisco, CA, USA

Abstract

ABSTRACT Biophysics is an interdisciplinary pursuit requiring researchers with knowledge and skills in several areas. Optical instruments and computers are fundamental tools in biophysics research to collect and analyze data. We developed a 1-semester Optical Engineering Laboratory course to teach image processing, optical engineering, and research skills to undergraduate students majoring in biology and biochemistry. With the use of development systems on students' laptops and in the cloud, students learned image processing with Python and OpenCV. Each student constructed a microprocessor-based lensless holographic microscope, gaining hands-on experience with optical engineering. The class culminated in original, student-designed research projects. All lectures, hands-on labs, and student research projects were performed both in person and remotely, in response to the COVID-19 pandemic.

Publisher

Biophysical Society

Subject

General Earth and Planetary Sciences,General Environmental Science

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