Relic DNA effects on the estimates of bacterial community composition and taxa dynamics in soil-Reference-Cited by-同舟云学术

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Relic DNA effects on the estimates of bacterial community composition and taxa dynamics in soil

Published:2023-05-16 Issue:12 Volume:107 Page:4109-4117
ISSN:0175-7598
Container-title:Applied Microbiology and Biotechnology
language:en
Short-container-title:Appl Microbiol Biotechnol

Author:

Sun Yao-Qin,Ge Yuan^ORCID

Funder

National Natural Science Foundation of China

Second Tibetan Plateau Scientific Expedition and Research Program

State Key Laboratory of Urban and Regional Ecology

Publisher

Springer Science and Business Media LLC

Subject

Applied Microbiology and Biotechnology,General Medicine,Biotechnology

Link

https://link.springer.com/content/pdf/10.1007/s00253-023-12576-3.pdf

Reference30 articles.

1. Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech Xu Z, Kightley EP, Thompson LR, Hyde ER, Gonzalez A, Knight R (2017) Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems 2:e00191–16

2. Blankinship JC, Becerra CA, Schaeffer SM, Schimel JP (2014) Separating cellular metabolism from exoenzyme activity in soil organic matter decomposition. Soil Biol Biochem 71:68–75

3. Carini P, Delgado-Baquerizo M, Hinckley ELS, Holland-Moritz H, Brewer TE, Rue G, Vanderburgh C, McKnight D, Fierer N (2020) Effects of spatial variability and relic DNA removal on the detection of temporal dynamics in soil microbial communities. mBio 11:e02776–02719

4. Carini P, Marsden PJ, Leff J, Morgan EE, Strickland MS, Fierer N (2016) Relic DNA is abundant in soil and obscures estimates of soil microbial diversity. Nat Microbiol 2:1–6

5. Costa AMA, Santos AO, Sousa J, Rodrigues JL, Gudina EJ, Silverio SC, Rodrigues LR (2021) Improved method for the extraction of high-quality DNA from lignocellulosic compost samples for metagenomic studies. Appl Microbiol Biotechnol 105(23):8881–8893

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