Bioinformatics Approaches to Studying Plant Long Noncoding RNAs (lncRNAs): Identification and Functional Interpretation of lncRNAs from RNA-Seq Data Sets-Reference-Cited by-同舟云学术

Bioinformatics Approaches to Studying Plant Long Noncoding RNAs (lncRNAs): Identification and Functional Interpretation of lncRNAs from RNA-Seq Data Sets

Published:2019 Issue: Volume: Page:197-205
ISSN:1064-3745
Container-title:Methods in Molecular Biology
language:
Short-container-title:

Author:

Sun Hai-Xi,Chua Nam-Hai

Publisher

Springer New York

Link

http://link.springer.com/content/pdf/10.1007/978-1-4939-9045-0_11

Reference38 articles.

1. Liu J, Jung C, Xu J, Wang H, Deng S, Bernad L, Arenas-Huertero C, Chua NH (2012) Genome-wide analysis uncovers regulation of long intergenic noncoding RNAs in Arabidopsis. Plant Cell 24(11):4333–4345. https://doi.org/10.1105/tpc.112.102855

2. Wang H, Chung PJ, Liu J, Jang IC, Kean MJ, Xu J, Chua NH (2014) Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis. Genome Res 24(3):444–453. https://doi.org/10.1101/gr.165555.113

3. Ariel F, Jegu T, Latrasse D, Romero-Barrios N, Christ A, Benhamed M, Crespi M (2014) Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop. Mol Cell 55(3):383–396. https://doi.org/10.1016/j.molcel.2014.06.011

4. Bardou F, Ariel F, Simpson CG, Romero-Barrios N, Laporte P, Balzergue S, Brown JW, Crespi M (2014) Long noncoding RNA modulates alternative splicing regulators in Arabidopsis. Dev Cell 30(2):166–176. https://doi.org/10.1016/j.devcel.2014.06.017

5. Swiezewski S, Liu F, Magusin A, Dean C (2009) Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target. Nature 462(7274):799–802. https://doi.org/10.1038/nature08618

Cited by 8 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Investigating nicotine pathway-related long non-coding RNAs in tobacco;Frontiers in Genetics;2023-01-19

2. Investigating nicotine pathway-related long noncoding RNAs in Nicotiana tabacum;2022-08-23

3. Genome-Wide Analysis of Alternative Splicing and Non-Coding RNAs Reveal Complicated Transcriptional Regulation in Cannabis sativa L.;International Journal of Molecular Sciences;2021-11-05

4. Non-Canonical Functions of Splicing Factors in RNA Metabolism;Critical Reviews in Plant Sciences;2020-11-01

5. PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs;Nucleic Acids Research;2020-10-20