Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute-Reference-Cited by-同舟云学术

Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute

Published:2023-05-30 Issue:3 Volume:103 Page:857-875
ISSN:0970-4140
Container-title:Journal of the Indian Institute of Science
language:en
Short-container-title:J Indian Inst Sci

Author:

Mukherjee Supratim,Palaniappan Krishnaveni,Seshadri Rekha,Chu Ken,Ratner Anna,Huang Jinghua,Huntemann Marcel,Hajek Patrick,Ritter Stephan,Webb Cody,Wu Dongying,Varghese Neha,Stamatis Dimitri,Li Cindy Tianqing,Ovchinnikova Galina,Bowers Robert M.,Camargo Antonio Pedro,Nayfach Stephen,Schulz Frederik,Roux Simon,Woyke Tanja,Eloe-Fadrosh Emiley A.,Ivanova Natalia N.,Kyrpides Nikos C.,Chen I.-Min A.,Reddy T. B. K.^ORCID

Publisher

Springer Science and Business Media LLC

Subject

Multidisciplinary

Link

https://link.springer.com/content/pdf/10.1007/s41745-023-00365-w.pdf

Reference43 articles.

1. Kyrpides NC, Hugenholtz P, Eisen JA et al (2014) Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLoS Biol 12:e1001920. https://doi.org/10.1371/journal.pbio.1001920

2. Kyrpides NC, Woyke T, Eisen JA et al (2014) Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project. Stand Genom Sci 9:1278–1284. https://doi.org/10.4056/sigs.5068949

3. Seshadri R, Roux S, Huber KJ et al (2022) Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes. Cell Genom. https://doi.org/10.1016/j.xgen.2022.100213

4. Mukherjee S, Stamatis D, Li CT et al (2022) Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9. Nucleic Acids Res. https://doi.org/10.1093/nar/gkac974

5. Chen I-MA, Chu K, Palaniappan K et al (2022) The IMG/M data management and analysis system v.7: content updates and new features. Nucleic Acids Res. https://doi.org/10.1093/nar/gkac976

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