Using Structural and Physical–Chemical Parameters to Identify, Classify, and Predict Functional Districts in Proteins—The Role of Electrostatic Potential

Author:

Neshich Goran,Pena Neshich Izabella Agostinho,Moraes Fabio,Salim Jose Augusto,Borro Luiz,Yano Inacio Henrique,Mazoni Ivan,Jardine Jose Gilberto,Rocchia Walter

Publisher

Springer International Publishing

Reference76 articles.

1. Neshich G, Mancini A, Yamagishi M, Kuser P, Fileto R, Baudet C, Pinto I, Montagner A, Palandrani J, Krauchenco J, Torres R, Souza S, Togawa R, Higa RH (2004) Java protein dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure, Nucl Acids Res 32(Web Server issue):W595–W601

2. Neshich G, Togawa R, Mancini AL, Kuser PR, Yamagishi MEB, Pappas G Jr, Torres WV, Campos TF, Ferreira LL, Luna FM, Oliveira AG, Miura RT, Inoue MK, Horita LG, de Souza DF, Dominiquini F, Álvaro A (2003) STING millennium: a web based suite of programs for comprehensive and simultaneous analysis of protein structure and sequence. Nucl Acids Res 31(13):3386–3392

3. Neshich G, Borro LC, Higa R, Kuser P, Yamagishi M, Franco EH, Krauchenco J, Fileto R, Ribeiro A, Bezerra G, Velludo T, Jimenez T, Furukawa N, Teshima H, Kitajima K, Bava A (2005)  Diamond STING server. Nucl Acids Res 33(Web Server issue):W29–35

4. Neshich G, Mancini AL, Yamagishi MEB, Kuser PR, Fileto R, Pinto IP, Palandrani JF, Krauchenco JN, Baudet C, Montagner AJ, Higa RH (2005) STING report: convenient web-based application for graphic and tabular presentations of protein sequence, structure and function descriptors from the STING database. Nucl Acids Res 33(Database Issue):D269–D274

5. Oliveira SRM, Almeida GV, Souza’ KRR, Rodrigues DN, Kuser-Falcão PR, Yamagishi MEB, Santos EH, Vieira FD, Jardine JG, Neshich G (2007) STING\_RDB: a relational database of structural parameters for protein analysis with support for data warehousing and data. Mining Genet Mol Res 6(4):911–922

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