Comparative analysis of de novo transcriptome assembly-Reference-Cited by-同舟云学术

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Comparative analysis of de novo transcriptome assembly

Published:2013-02 Issue:2 Volume:56 Page:156-162
ISSN:1674-7305
Container-title:Science China Life Sciences
language:en
Short-container-title:Sci. China Life Sci.

Author:

Clarke Kaitlin,Yang Yi,Marsh Ronald,Xie LingLin,K. Zhang Ke

Publisher

Springer Science and Business Media LLC

Subject

General Agricultural and Biological Sciences,General Environmental Science,General Biochemistry, Genetics and Molecular Biology

Link

http://link.springer.com/content/pdf/10.1007/s11427-013-4444-x.pdf

Reference20 articles.

1. Martin J A, Wang Z. Next-generation transcriptome assembly. Nat Rev Genet, 2011, 12: 671–682

2. Schliesky S, Gowik U, Weber A P, et al. RNA-Seq assembly-are we there yet? Front Plant Sci, 2012, 3: 220

3. Li Z, et al. Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph. Brief Funct Genom, 2012, 11: 25–37

4. Myers E W. Toward simplifying and accurately formulating fragment assembly. J Comput Biol, 1995, 2: 275–290

5. Chevreux B, Pfisterer T, Drescher B, et al. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res, 2004, 14: 1147–1159

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