A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics-Reference-Cited by-同舟云学术

A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics

Published:2024 Issue: Volume: Page:587-609
ISSN:1064-3745
Container-title:Methods in Molecular Biology
language:en
Short-container-title:

Author:

Eloe-Fadrosh Emiley A.^ORCID,Mungall Christopher J.^ORCID,Miller Mark Andrew^ORCID,Smith Montana^ORCID,Patil Sujay Sanjeev^ORCID,Kelliher Julia M.^ORCID,Johnson Leah Y. D.^ORCID,Rodriguez Francisca E.^ORCID,Chain Patrick S. G.^ORCID,Hu Bin^ORCID,Thornton Michael B.^ORCID,McCue Lee Ann^ORCID,McHardy Alice Carolyn^ORCID,Harris Nomi L.^ORCID,Reddy T. B. K.^ORCID,Mukherjee Supratim^ORCID,Hunter Christopher I.^ORCID,Walls Ramona^ORCID,Schriml Lynn M.^ORCID

Abstract

AbstractComparative analysis of (meta)genomes necessitates aggregation, integration, and synthesis of well-annotated data using standards. The Genomic Standards Consortium (GSC) collaborates with the research community to develop and maintain the Minimum Information about any (x) Sequence (MIxS) reporting standard for genomic data. To facilitate the use of the GSC’s MIxS reporting standard, we provide a description of the structure and terminology, how to navigate ontologies for required terms in MIxS, and demonstrate practical usage through a soil metagenome example.

Publisher

Springer US

Link

https://link.springer.com/content/pdf/10.1007/978-1-0716-3838-5_20

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